Computational Research


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Groups and Facilities


(1 mention)

Center for Ag Synthetic Biology 
Unique automated platform for agricultural synthetic biology


 

News

Faculty 360 | John Munafo, 7/12/2017

Faculty 360 | Meg Staton, 2/24/2016

 

Recent Publications

Determining a Geographic High Resolution Supply Chain Network for a Large Scale Biofuel Industry Lambert, L. H., B. C. English, D. M. Lambert, O. Shylo, J. A. Larson, T. E. Yu, and B. S. Wilson.  2018.  Applied Energy, 21866-281. [Abstract]

Identification of recombination hotspots throughout the soybean [Glycine max (L.) Merr.] genome.  McConaughy, S, G. Graef, K. Amundsen, Q. Song, V. R. Pantalone, and D. Hyten.  2018.  Molecular & Celluar Biology of the Soybean. [Abstract]

Computational Identification of Terpene Synthase Genes and Their Evolutionary Analysis.  Jia, Q  2016.  Ph.D. Dissertation.

Catalysis for conversion of biorefinery lignin to high value chemicals structural and computational analysis for improved catalyst design.  Bozell, J. J., T. Elder, B. Bionic, D. Cedeno, S. Chatterjee, K. Cheng, and C. Njiojob.  2015.  18th International Symposium on Wood, Fiber and Pulping Chemistry, BOKU, Vienna, Austria.

Computational fluid dynamics modelling of a bench-scale fluidized bed biomass gasifier.  Oluwafemi Oyedeji, and N. Abdoulmoumine.  2015.  2016 Annual International Meeting of the American Society of Agricultural and Biological Engineers. [Abstract]

Understanding substrate specificity of related plant methylesterases (MESs) from computational investigations.  Qian, P., N. Zhao, F. Chen, and H. Guo.  2015.  Chemical Journal of Chinese Universities., 36: 2283-2291.

Computational ranking of yerba mate small molecules based on their predicted contribution to antibacterial activity against methicillin-resistant Staphylococcus aureus.  Rempe, C. S., K. Burris, H. L. Woo, B. Goodrich, D. K. Gosnell, T. J. Tschaplinkski, and C. N. Stewart, Jr..  2015.  PLoS ONE.

Tripal: an open source toolkit for building genomic and genetic data websites and databases Ficklin, S., L. A. Sanderson, M. E. Staton, C. H. Cheng, S. Jung, K. Bett, and D. Main.  2014.  Bioinformatics Open Source Conference Proceedings, Bioinformatics Open Source Conference, July 11-12, 2014 Boston, Massachusetts. [Abstract]

Exploration of Preterm Birth Rates Using the Public Health Exposome Database and Computational Analysis Methods Kershenbaum, A. D., M. A. Langston, R. S. Levine, A. M. Saxton, T. J. Oyana, B. J. Kilbourne, G. L. Rogers, L. S. Gittner, S. H. Baktash, P. Matthews-Juarez, and P. D. Juarez.  2014.  Int. J. Environ. Res. Public Health, 11(12), 12346-12366. [Abstract]

Computational discovery of soybean promoter cis-regulatory elements for the construction of soybean cyst nematode-inducible synthetic promoters Liu, W., M. Mazarei, Y. Peng, M. Fethe, M. R. Rudis, J. Lin, R. J. Millwood, P. Arelli, and C. N. Stewart, Jr..  2014.  Plant Biotechnology Journal.

Computational ranking of plant compounds based on antimicrobial class against methicillin resistant Staphylococcus aureus.  Rempe, C. S., H. L. Woo, B. Goodrich, D. Gosnell, K. Burris, T. J. Tschaplinkski, and C. N. Stewart, Jr..  2014.  CoSMoS, Colonial Williamsburg, VA: August 11-13, 2014.

Computational mechanistic studies of acid-catalyzed lignin model dimers for lignin depolymerization Kim, S., M. R. Sturgeon, S. Chmely, R. S. Paton, and G. T. Beckham.  2013.  Abstract from scientific meeting. [Abstract]